caa a22 4500 467894450 CHVBK 20180406152758.0 cr unu---uuuuu 170328e20060601xx s 000 0 eng 10.1007/s11103-006-0026-7 doi (NATIONALLICENCE)springer-10.1007/s11103-006-0026-7 A SINE Family Widely Distributed in the Plant Kingdom and its Evolutionary History [Elektronische Daten] [Jeffrey Fawcett, Taihachi Kawahara, Hitoshi Watanabe, Yasuo Yasui] The distribution and evolution of Au SINE in plants were examined. Au SINE is a short interspersed element first identified in Aegilops umbellulata, a close relative of wheat. The Au SINE was previously found in species such as wheat, maize, tobacco, and tomato, but not in rice. In this study, we first searched public databases, and next examined the presence of Au in a broad range of plant species by PCR using internal primers of Au. Although Au is likely to be absent from many species including rice, it was identified in many Gramineae, Solanaceae, and Fabaceae species, and also in a basal angiosperm species, Asimina triloba. Phylogenetic studies suggest that Au SINE originated before the divergence of monocots and eudicots. Au SINE sequences of Asimina, Triticum, Zea, Nicotiana, Lotus, Medicago, and Glycine were aligned and compared. Although sequences of Au were highly conserved among distantly related species, every Au element in Glycine had a 16bp deletion and its 3′ end differed from sequences of other species. This type of Au could only be found in G. max, and not in other species including other Fabaceae species such as M.␣truncatula and L. japonicus. This is the first report of a plant SINE family present in multiple lineages, and the evolution of Au SINE in the plant kingdom, especially in Gramineae and Fabaceae is discussed. Springer, 2006 evolution nationallicence plant nationallicence retroelement nationallicence SINE nationallicence Fawcett Jeffrey Laboratory of Crop Evolution, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwakecho, 606-8502, Sakyoku, Kyoto, Japan aut Kawahara Taihachi Laboratory of Crop Evolution, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwakecho, 606-8502, Sakyoku, Kyoto, Japan aut Watanabe Hitoshi Kyoto Herbal Garden, Takeda Pharmaceutical Company Limited, Takenouchicho 11, 606-8134, Ichijoji, Sakyoku, Kyoto, Japan aut Yasui Yasuo Laboratory of Crop Evolution, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwakecho, 606-8502, Sakyoku, Kyoto, Japan aut Plant Molecular Biology Kluwer Academic Publishers 61/3(2006-06-01), 505-514 0167-4412 61:3<505 2006 61 11103 https://doi.org/10.1007/s11103-006-0026-7 text/html Onlinezugriff via DOI 1 research-article jats NATIONALLICENCE 856 40 https://doi.org/10.1007/s11103-006-0026-7 text/html Onlinezugriff via DOI NATIONALLICENCE 700 1- Fawcett Jeffrey Laboratory of Crop Evolution, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwakecho, 606-8502, Sakyoku, Kyoto, Japan aut NATIONALLICENCE 700 1- Kawahara Taihachi Laboratory of Crop Evolution, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwakecho, 606-8502, Sakyoku, Kyoto, Japan aut NATIONALLICENCE 700 1- Watanabe Hitoshi Kyoto Herbal Garden, Takeda Pharmaceutical Company Limited, Takenouchicho 11, 606-8134, Ichijoji, Sakyoku, Kyoto, Japan aut NATIONALLICENCE 700 1- Yasui Yasuo Laboratory of Crop Evolution, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwakecho, 606-8502, Sakyoku, Kyoto, Japan aut NATIONALLICENCE 773 0- Plant Molecular Biology Kluwer Academic Publishers 61/3(2006-06-01), 505-514 0167-4412 61:3<505 2006 61 11103 Metadata rights reserved Springer special CC-BY-NC licence nationallicence BK010053 XK010053 XK010000 NATIONALLICENCE NATIONALLICENCE NL-springer