naa a22 4500 510730590 CHVBK 20180411082951.0 cr unu---uuuuu 180411e20130601xx s 000 0 eng 10.1007/s11295-013-0604-1 doi (NATIONALLICENCE)springer-10.1007/s11295-013-0604-1 The chloroplast genome sequence of Syzygium cumini (L.) and its relationship with other angiosperms [Elektronische Daten] [Huma Asif, Asifullah Khan, Asif Iqbal, Ishtiaq Khan, Berthold Heinze, M. Azim] Only a few studies to date have conducted comparative genomics in the Myrtaceae family. Here, we report the complete sequence and bioinformatics analysis of the chloroplast genome of Syzygium cumini (L.), one of the family members. The size of S. cumini cp genome was within the range of reported angiosperm chloroplast genomes. Comparison of S. cumini cpDNA sequence with previously reported partial sequences of S. cumini revealed several SNPs that resulted in non-synonymous mutations in maturase K and NADH-plastoquinone oxidoreductase subunit-5. These polymorphic characters might serve as intra-specific markers to address whether lineage sorting from polymorphic ancestry has occurred. Comparison of the S. cumini chloroplast genome with related dicots revealed an expansion in the intergenic spacer located between IRA/large single copy (LSC) border and the first gene of LSC region, driven by sequence of 54bp. This type of variation in the intergenic regions can be utilized in the development of species-specific vectors for chloroplast genetic engineering. Several of the longer (30-40bp) repeats were found to be conserved in other dicot species, suggesting that they might be widespread in angiosperm chloroplast genomes. Springer-Verlag Berlin Heidelberg, 2013 Myrtaceae nationallicence Plastid nationallicence Next-generation sequencing nationallicence Eucalyptus nationallicence Asif Huma H.E.J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, 75270, Karachi, Pakistan aut Khan Asifullah H.E.J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, 75270, Karachi, Pakistan aut Iqbal Asif H.E.J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, 75270, Karachi, Pakistan aut Khan Ishtiaq H.E.J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, 75270, Karachi, Pakistan aut Heinze Berthold Department of Genetics, Federal Research Centre for Forests, Hauptstraße 7, 1140, Vienna, Austria aut Azim M. H.E.J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, 75270, Karachi, Pakistan aut Tree Genetics & Genomes Springer-Verlag 9/3(2013-06-01), 867-877 1614-2942 9:3<867 2013 9 11295 https://doi.org/10.1007/s11295-013-0604-1 text/html Onlinezugriff via DOI 1 research-article jats NATIONALLICENCE 856 40 https://doi.org/10.1007/s11295-013-0604-1 text/html Onlinezugriff via DOI NATIONALLICENCE 700 1- Asif Huma H.E.J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, 75270, Karachi, Pakistan aut NATIONALLICENCE 700 1- Khan Asifullah H.E.J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, 75270, Karachi, Pakistan aut NATIONALLICENCE 700 1- Iqbal Asif H.E.J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, 75270, Karachi, Pakistan aut NATIONALLICENCE 700 1- Khan Ishtiaq H.E.J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, 75270, Karachi, Pakistan aut NATIONALLICENCE 700 1- Heinze Berthold Department of Genetics, Federal Research Centre for Forests, Hauptstraße 7, 1140, Vienna, Austria aut NATIONALLICENCE 700 1- Azim M. H.E.J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, 75270, Karachi, Pakistan aut NATIONALLICENCE 773 0- Tree Genetics & Genomes Springer-Verlag 9/3(2013-06-01), 867-877 1614-2942 9:3<867 2013 9 11295 Metadata rights reserved Springer special CC-BY-NC licence nationallicence BK010053 XK010053 XK010000 NATIONALLICENCE NATIONALLICENCE NL-springer