naa a22 4500 510787584 CHVBK 20180411083308.0 cr unu---uuuuu 180411e20131201xx s 000 0 eng 10.1007/s12041-013-0283-6 doi (NATIONALLICENCE)springer-10.1007/s12041-013-0283-6 Complete sequence of the mitochondrial genome of Odontamblyopus rubicundus (Perciformes: Gobiidae): genome characterization and phylogenetic analysis [Elektronische Daten] [TIANXING LIU, XIAOXIAO JIN, RIXIN WANG, TIANJUN XU] Odontamblyopus rubicundus is a species of gobiid fishes, inhabits muddy-bottomed coastal waters. In this paper, the first complete mitochondrial genome sequence of O. rubicundus is reported. The complete mitochondrial genome sequence is 17119bp in length and contains 13 protein-coding genes, two rRNA genes, 22 tRNA genes, a control region and an L-strand origin as in other teleosts. Most mitochondrial genes are encoded on H-strand except for ND6 and seven tRNA genes. Some overlaps occur in protein-coding genes and tRNAs ranging from 1 to 7bp. The possibly nonfunctional L-strand origin folded into a typical stem-loop secondary structure and a conserved motif (5′-GCCGG-3′) was found at the base of the stem within the tRNA Cys gene. The TAS, CSB-2 and CSB-3 could be detected in the control region. However, in contrast to most of other fishes, the central conserved sequence block domain and the CSB-1 could not be recognized in O.rubicundus, which is consistent with Acanthogobius hasta (Gobiidae). In addition, phylogenetic analyses based on different sequences of species of Gobiidae and different methods showed that the classification of O.rubicundus into Odontamblyopus due to morphology is debatable. Indian Academy of Sciences, 2013 mitochondrial genome nationallicence phylogenetic analysis nationallicence Gobiidae nationallicence Bayesian analysis nationallicence Odontamblyopus rubicundus nationallicence LIU TIANXING Laboratory for Marine Living Resources and Molecular Engineering, College of Marine Science, Zhejiang Ocean University, 316000, Zhoushan, People's Republic of China aut JIN XIAOXIAO Laboratory for Marine Living Resources and Molecular Engineering, College of Marine Science, Zhejiang Ocean University, 316000, Zhoushan, People's Republic of China aut WANG RIXIN Laboratory for Marine Living Resources and Molecular Engineering, College of Marine Science, Zhejiang Ocean University, 316000, Zhoushan, People's Republic of China aut XU TIANJUN Laboratory for Marine Living Resources and Molecular Engineering, College of Marine Science, Zhejiang Ocean University, 316000, Zhoushan, People's Republic of China aut Journal of Genetics Springer India 92/3(2013-12-01), 423-432 0022-1333 92:3<423 2013 92 12041 https://doi.org/10.1007/s12041-013-0283-6 text/html Onlinezugriff via DOI 1 research-article jats NATIONALLICENCE 856 40 https://doi.org/10.1007/s12041-013-0283-6 text/html Onlinezugriff via DOI NATIONALLICENCE 700 1- LIU TIANXING Laboratory for Marine Living Resources and Molecular Engineering, College of Marine Science, Zhejiang Ocean University, 316000, Zhoushan, People's Republic of China aut NATIONALLICENCE 700 1- JIN XIAOXIAO Laboratory for Marine Living Resources and Molecular Engineering, College of Marine Science, Zhejiang Ocean University, 316000, Zhoushan, People's Republic of China aut NATIONALLICENCE 700 1- WANG RIXIN Laboratory for Marine Living Resources and Molecular Engineering, College of Marine Science, Zhejiang Ocean University, 316000, Zhoushan, People's Republic of China aut NATIONALLICENCE 700 1- XU TIANJUN Laboratory for Marine Living Resources and Molecular Engineering, College of Marine Science, Zhejiang Ocean University, 316000, Zhoushan, People's Republic of China aut NATIONALLICENCE 773 0- Journal of Genetics Springer India 92/3(2013-12-01), 423-432 0022-1333 92:3<423 2013 92 12041 Metadata rights reserved Springer special CC-BY-NC licence nationallicence BK010053 XK010053 XK010000 NATIONALLICENCE NATIONALLICENCE NL-springer