Proteome signatures—how are they obtained and what do they teach us?

Verfasser / Beitragende:
[João da Costa, Virginia Carvalhais, Rita Ferreira, Francisco Amado, Manuel Vilanova, Nuno Cerca, Rui Vitorino]
Ort, Verlag, Jahr:
2015
Enthalten in:
Applied Microbiology and Biotechnology, 99/18(2015-09-01), 7417-7431
Format:
Artikel (online)
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024 7 0 |a 10.1007/s00253-015-6795-7  |2 doi 
035 |a (NATIONALLICENCE)springer-10.1007/s00253-015-6795-7 
245 0 0 |a Proteome signatures—how are they obtained and what do they teach us?  |h [Elektronische Daten]  |c [João da Costa, Virginia Carvalhais, Rita Ferreira, Francisco Amado, Manuel Vilanova, Nuno Cerca, Rui Vitorino] 
520 3 |a The dawn of a new Proteomics era, just over a decade ago, allowed for large-scale protein profiling studies that have been applied in the identification of distinctive molecular cell signatures. Proteomics provides a powerful approach for identifying and studying these multiple molecular markers in a vast array of biological systems, whether focusing on basic biological research, diagnosis, therapeutics, or systems biology. This is a continuously expanding field that relies on the combination of different methodologies and current advances, both technological and analytical, which have led to an explosion of protein signatures and biomarker candidates. But how are these biological markers obtained? And, most importantly, what can we learn from them? Herein, we briefly overview the currently available approaches for obtaining relevant information at the proteome level, while noting the current and future roles of both traditional and modern proteomics. Moreover, we provide some considerations on how the development of powerful and robust bioinformatics tools will greatly benefit high-throughput proteomics. Such strategies are of the utmost importance in the rapidly emerging field of immunoproteomics, which may play a key role in the identification of antigens with diagnostic and/or therapeutic potential and in the development of new vaccines. Finally, we consider the present limitations in the discovery of new signatures and biomarkers and speculate on how such hurdles may be overcome, while also offering a prospect for the next few years in what could be one of the most significant strategies in translational medicine research. 
540 |a Springer-Verlag Berlin Heidelberg, 2015 
690 7 |a Proteome signatures  |2 nationallicence 
690 7 |a Biomarkers  |2 nationallicence 
690 7 |a Proteomics  |2 nationallicence 
690 7 |a Immunoproteomics  |2 nationallicence 
700 1 |a da Costa  |D João  |u Mass Spectrometry Centre, QOPNA, Department of Chemistry, University of Aveiro, 3810-193, Aveiro, Aveiro, Portugal  |4 aut 
700 1 |a Carvalhais  |D Virginia  |u Mass Spectrometry Centre, QOPNA, Department of Chemistry, University of Aveiro, 3810-193, Aveiro, Aveiro, Portugal  |4 aut 
700 1 |a Ferreira  |D Rita  |u Mass Spectrometry Centre, QOPNA, Department of Chemistry, University of Aveiro, 3810-193, Aveiro, Aveiro, Portugal  |4 aut 
700 1 |a Amado  |D Francisco  |u Mass Spectrometry Centre, QOPNA, Department of Chemistry, University of Aveiro, 3810-193, Aveiro, Aveiro, Portugal  |4 aut 
700 1 |a Vilanova  |D Manuel  |u IBMC - Instituto de Biologia Molecular e Celular, Rua do Campo Alegre 83, Porto, Portugal  |4 aut 
700 1 |a Cerca  |D Nuno  |u CEB - Centre of Biological Engineering, LIBRO - Laboratory of Research in Biofilms Rosário Oliveira, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal  |4 aut 
700 1 |a Vitorino  |D Rui  |u Mass Spectrometry Centre, QOPNA, Department of Chemistry, University of Aveiro, 3810-193, Aveiro, Aveiro, Portugal  |4 aut 
773 0 |t Applied Microbiology and Biotechnology  |d Springer Berlin Heidelberg  |g 99/18(2015-09-01), 7417-7431  |x 0175-7598  |q 99:18<7417  |1 2015  |2 99  |o 253 
856 4 0 |u https://doi.org/10.1007/s00253-015-6795-7  |q text/html  |z Onlinezugriff via DOI 
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900 7 |a Metadata rights reserved  |b Springer special CC-BY-NC licence  |2 nationallicence 
908 |D 1  |a review-article  |2 jats 
949 |B NATIONALLICENCE  |F NATIONALLICENCE  |b NL-springer 
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950 |B NATIONALLICENCE  |P 700  |E 1-  |a da Costa  |D João  |u Mass Spectrometry Centre, QOPNA, Department of Chemistry, University of Aveiro, 3810-193, Aveiro, Aveiro, Portugal  |4 aut 
950 |B NATIONALLICENCE  |P 700  |E 1-  |a Carvalhais  |D Virginia  |u Mass Spectrometry Centre, QOPNA, Department of Chemistry, University of Aveiro, 3810-193, Aveiro, Aveiro, Portugal  |4 aut 
950 |B NATIONALLICENCE  |P 700  |E 1-  |a Ferreira  |D Rita  |u Mass Spectrometry Centre, QOPNA, Department of Chemistry, University of Aveiro, 3810-193, Aveiro, Aveiro, Portugal  |4 aut 
950 |B NATIONALLICENCE  |P 700  |E 1-  |a Amado  |D Francisco  |u Mass Spectrometry Centre, QOPNA, Department of Chemistry, University of Aveiro, 3810-193, Aveiro, Aveiro, Portugal  |4 aut 
950 |B NATIONALLICENCE  |P 700  |E 1-  |a Vilanova  |D Manuel  |u IBMC - Instituto de Biologia Molecular e Celular, Rua do Campo Alegre 83, Porto, Portugal  |4 aut 
950 |B NATIONALLICENCE  |P 700  |E 1-  |a Cerca  |D Nuno  |u CEB - Centre of Biological Engineering, LIBRO - Laboratory of Research in Biofilms Rosário Oliveira, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal  |4 aut 
950 |B NATIONALLICENCE  |P 700  |E 1-  |a Vitorino  |D Rui  |u Mass Spectrometry Centre, QOPNA, Department of Chemistry, University of Aveiro, 3810-193, Aveiro, Aveiro, Portugal  |4 aut 
950 |B NATIONALLICENCE  |P 773  |E 0-  |t Applied Microbiology and Biotechnology  |d Springer Berlin Heidelberg  |g 99/18(2015-09-01), 7417-7431  |x 0175-7598  |q 99:18<7417  |1 2015  |2 99  |o 253